diff --git a/apps/server/Dockerfile b/apps/server/Dockerfile
index 4c2721504..46df1763b 100644
--- a/apps/server/Dockerfile
+++ b/apps/server/Dockerfile
@@ -3,7 +3,7 @@ FROM node:22.14.0-bullseye-slim AS builder
 
     # Install native dependencies since we might be building cross-platform.
     WORKDIR /usr/src/app/build
-    COPY ./dist/package.json ./dist/pnpm-lock.yaml /usr/src/app/
+    COPY ./dist/package.json ./dist/pnpm-lock.yaml ./docker/pnpm-workspace.yaml /usr/src/app/
     RUN pnpm install --frozen-lockfile --prod && pnpm rebuild
 
 FROM node:22.14.0-bullseye-slim
diff --git a/apps/server/Dockerfile.alpine b/apps/server/Dockerfile.alpine
index 1f27b9400..d5b68c1fb 100644
--- a/apps/server/Dockerfile.alpine
+++ b/apps/server/Dockerfile.alpine
@@ -3,7 +3,7 @@ FROM node:22.14.0-alpine AS builder
 
     # Install native dependencies since we might be building cross-platform.
     WORKDIR /usr/src/app
-    COPY ./dist/package.json ./dist/pnpm-lock.yaml /usr/src/app/
+    COPY ./dist/package.json ./dist/pnpm-lock.yaml ./docker/pnpm-workspace.yaml /usr/src/app/
     RUN pnpm install --frozen-lockfile --prod && pnpm rebuild
 
 FROM node:22.14.0-alpine
diff --git a/apps/server/docker/pnpm-workspace.yaml b/apps/server/docker/pnpm-workspace.yaml
new file mode 100644
index 000000000..e7727cc4d
--- /dev/null
+++ b/apps/server/docker/pnpm-workspace.yaml
@@ -0,0 +1,2 @@
+onlyBuiltDependencies:
+- better-sqlite3
diff --git a/apps/server/package.json b/apps/server/package.json
index 3594e94d2..dd39f5020 100644
--- a/apps/server/package.json
+++ b/apps/server/package.json
@@ -166,10 +166,10 @@
         "defaultConfiguration": "alpine",
         "configurations": {
           "debian": {
-            "command": "docker build . -t triliumnext -f Dockerfile"
+            "command": "docker build . -t triliumnext-debian -f Dockerfile"
           },
           "alpine": {
-            "command": "docker build . -t triliumnext -f Dockerfile.alpine"
+            "command": "docker build . -t triliumnext-alpine -f Dockerfile.alpine"
           }
         }
       },
@@ -177,7 +177,16 @@
         "dependsOn": [
           "docker-build"
         ],
-        "command": "docker run -p 8081:8080 triliumnext"
+        "executor": "nx:run-commands",
+        "defaultConfiguration": "alpine",
+        "configurations": {
+          "debian": {
+            "command": "docker run -p 8081:8080 triliumnext-debian"
+          },
+          "alpine": {
+            "command": "docker run -p 8081:8080 triliumnext-alpine"
+          }
+        }
       }
     }
   }